PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00037.1_g00021.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 311aa    MW: 33439.8 Da    PI: 6.2669
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00037.1_g00021.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_178.21e-24215277163
                              XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                              e+elkr++rkq+NRe+ArrsR+RK+ae+e+L+++v++L++eN++L++el++l+ e++klk+e+
  Rsa1.0_00037.1_g00021.1 215 ERELKRQKRKQSNRESARRSRLRKQAECEQLQQRVESLTSENQSLRDELQRLSSECEKLKTEN 277
                              89**********************************************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077778.2E-29291IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1701.7E-20212275No hitNo description
PfamPF001701.5E-22215277IPR004827Basic-leucine zipper domain
SMARTSM003386.1E-23215279IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.829217280IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.7E-12218274No hitNo description
CDDcd147022.77E-23220270No hitNo description
PROSITE patternPS000360222237IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010629Biological Processnegative regulation of gene expression
GO:0090342Biological Processregulation of cell aging
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MGTSEEKTPS KQASSAQDIP PTPYPDWSNS MQAYYGGGGT PNPFFPSPVG SPSPHPYMWG  60
AQHHMMPPYG TPVPYPAMYP PGAVYAHPGM PMPPTSAPTN KETVKEQAAG KKSKGNLKRK  120
GEGGEKAPSG SGNDGVSQSD ESVTAGSSDE NGENANHQEQ GSVRKPSFGQ MLADASSQSN  180
TTGEIVPMKP LAPGTNLNMG MDLWSSQAGV AVKDERELKR QKRKQSNRES ARRSRLRKQA  240
ECEQLQQRVE SLTSENQSLR DELQRLSSEC EKLKTENSSI QEELVRVHGP EAVAANLEQS  300
DAGSKDGEGT N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231237RRSRLRK
2231238RRSRLRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00039PBMTransfer from AT4G36730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX839220.0X83922.1 B.napus mRNA for G-Box binding factor 1A.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411967.10.0hypothetical protein EUTSA_v10025733mg
SwissprotP427740.0GBF1_ARATH; G-box-binding factor 1
TrEMBLV4LS380.0V4LS38_EUTSA; Uncharacterized protein
STRINGBra011701.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72742643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.11e-172G-box binding factor 1